Certain proteogenomic signatures in the prostate cancers of men of African and European ancestries were associated with higher risk of metastasis and/or recurrence of the disease, according to a study presented at the American Association for Cancer Research (AACR) Annual Meeting 2024, held April 5-10.
A study that combines proteomics and genomics is a field of research known as proteogenomics.
Shyh-Han Tan, PhD, associate professor at the Uniformed Services University of the Health Sciences (USUHS) Department of Surgery and scientist at the Henry M. Jackson Foundation (HJF), who presented the study, explained it as similar to detecting errors in a person’s instruction manual.
“The DNA in every cell is like an instruction manual where genes are the specific sections that carry instructions for making proteins—the building blocks needed for the cell to work properly,” Tan said.
“But errors in the instructions, or DNA mutations, can lead to the generation of faulty proteins. The advantage of a proteogenomic study is that it can examine both the DNA and proteins to help understand where the errors are occurring. Since every one of us has slight differences in our DNA, this can hopefully lead to a more precise understanding of prostate cancer.”
Tan and his colleagues conducted a proteogenomic analysis using early-stage prostate cancer tissue specimens of 57 patients of African ancestry and 55 patients of European ancestry obtained from the Center for Prostate Disease Research (CPDR), a research program of the USUHS Department of Surgery and the John P. Murtha Cancer Center at the Walter Reed National Military Medical Center.
“The availability of equal access to care in this military cohort was advantageous because it allowed us to limit the socioeconomic factors that might influence patient outcomes and to focus on the genomic and proteomic alterations as a molecular factor in health disparity,” said Cara Schafer, PhD, assistant professor at USUHS Department of Surgery and HJF scientist, who is the study’s lead author.
“These proteogenomic comparisons can help us bridge the gap in our understanding of why prostate cancer remains more deadly in men of African ancestry.”
Among their findings were mutation signatures and recurrent copy number alterations, which are changes in DNA, along with increases in protein expression in both cohorts that correlated with a higher risk for disease progression, as defined by biochemical recurrence (BCR) and/or metastasis following surgery. For example, they found:
“Differences in our genetic ancestry and the variations in gene mutation signatures can partly explain why some cancers are more aggressive than others and can reveal weaknesses in the cancer cells that can be used as a target for therapy,” Tan said.
“Additionally, it is important to understand that although we may find a mutation more frequently in one group or the other, as long as the patient has an identifiable mutation, their cancer can be susceptible to targeted treatment.
That’s the benefit of doing studies like these—it doesn’t focus on one group or the other, but everyone most affected by prostate cancer.”
Tan said the next step is to compare their proteogenomic results against publicly available data sets to confirm if the associations they found hold true in a larger set of patients, and to verify using preclinical models whether prostate tumours with specific gene alterations are sensitive to certain available treatment compounds.
Limitations of the study include its comparatively small sample size and an imbalance between the average age at diagnosis of the patients in each cohort, since men of African ancestry in the CPDR clinic tend to be diagnosed at a younger age.
Also, the tumour samples were from patients in the early stage of disease, so the findings do not reflect the more varied mutation profiles seen in late-stage or metastatic prostate cancer.
Funding for this study was provided in part by USUHS/Murtha Cancer Center Research Program under the Cancer Moonshot Initiative. Tan and Schafer disclose no conflicts of interest.
Disclaimer: The statements made within this press release are the sole responsibility of the authors and do not necessarily reflect the views, opinions, or policies of the USUHS, HJF, Department of Defense, or the Departments of the Army, Navy, or Air Force. Mention of trade names, commercial products, or organizations does not imply endorsement by the U.S. Government.
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